We're getting there!
I'm able to browse from the root up...yahoo!!!
When I select a file, it is adding an extra "/" to the beginning of the URL. For example:
<a href="//images/uploads/Florida Crown Results - Site Contest 2009.pdf" target="_self">
It also was restricting the PHP extension so I changed this line...
$kfm_banned_extensions = array('asp','cfm','cgi','ini','php3','php4','php5','phtm','pl','sh','shtm','shtml','ico');
...and it fixed it.
The comment on this line refers to uploads though - is that just an error in the comment text?
Thanks for the help. I appreciate it.