I can set you up with phone support... I'm just not sure how much it would help. I think I can help just as well from the forum for now. Keep working with me and I'll give you a call if I think it will help.
I can see I got most of the pages you listed, but not all. For instance I got all of them but new.html, litterlisting.html, and search.html.... same for you?
I looked through your site and couldn't find those pages linked from anywhere. What page are they linked from?
Actually I found that I got a few more pages by running another import on the page:
kennellinks.html
Actually it had imported most, they were .php pages so I didn't notice them at first. Doing the second import did get more files though.
Do two imports to the same directory:
popupie.js
kennellinks.html
That seems to have gotten all of the files for me... if it doesn't work for you, let me know the precise files that don't get downloaded and I can look into it more.