I think the problem may be related to the value in your global file for the absolute site root URL. This should not be a file system path but an absolute URL like a link:
yoursite.com/
You then specify the directory that the cms files are in for local and remote roots. It looks like you have got this part set correctly. Do you have a link where any part of this can be seen that you can post online? If need be I can open a ticket so we can exchange some info privately.