I fixed the issue with the live edit. That is updated in the WA_CMS/WA_CMS.php file.
I also updated the beta zip file with the change.
The latest version of ckeditor does the plain text formatting a little differently.
You can identify what tags, properties, and classes to keep when pasting individually.
You can add it on the update page in the editor code like:
$CKEditor_config["allowedContent"] = 'a[!href]; ul; li{text-align}(someclass); table; tbody; tr; td; div; img; h1; h2; h3; h4; h5';