includes folders

One of the things I do not like about WA extensions, is that each one creates its own includes folder in the site root. So, if I have data assist, universal email, ecart, menus etc all in the same site, then I have 5 or 6 includes folders all starting with WA_and then the name of the extension.
This really clutters up the site, and looks bad. It would be so much better if you could put everything inside of a parent includes folder (please just 'includes' not something like 'WA_includes'). I end up doing this manually, but then have to do a find and replace on every file and change the path, and then worst of all, the server behaviors are no longer recognized.

I realize this late in the game, it is probably a major problem to change, but is it possible?
Maybe change the paths so that it puts all new applications inside of a parent includes folder, but recognizes the SB, no matter where it is?

What do you think?

Thanks.
Tom