I need to revisit this as my deadline has past and can't complete a redo in time.
The entire site works and the only thing messed up is the file update for the products and the blog. At this time if I can get the products file update working I can go live with the site and deal with the blog later. I am wondering if I created a new directory and installed a new Powerstore on it if I'd be able to copy over the files needed to fix it? If so, which files would have been affected when I added the file manager with DataAssist.