No, you didn't miss anything. The workflow has just changed:
You will apply your DW template after the creation of the DA pages through the wizard,
This sounds like a "stopper" in the first moment, however, once you get used to that new procedure DA is overall much faster and more reliable.
Usually, when I run the wizard, I leave all newly created DA pages (results, details, insert, update, search) open in DW. Then go to the "elements" panel in dreamweaver, select the desired template and click "apply" to any of the new pages. Then just "Save all".
O.k. that's four or five clicks more...