Hope you had a nice time at cedar point.
The issue I can see here is that you have not created a JOIN you need to join the 2 tables together that way it will only pull the records as specified in your WHERE clause.
FROM companytable, companyindextable, optionstable
WHERE optionstable.optionsID > "1"
LEFT JOIN companyindextable ON companytable.companyID=companyindextable.companyID
LEFT JOIN optionstable ON companyindextable.optionsID=optionstable.optionsID
Let me know what happens